# data provided by UCSC for Cd4 raw measures of DnaseI hypersensitivity

## Documentation for package ‘encoDnaseI’ version 0.1-4

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

ALICOR | aligned and interpolated correlation for local maximum traces for two scatterplots
alicor | aligned and interpolated correlation for local maximum traces for two scatterplots
chrnum | Class "hg18track" container for hg18 annotation found in genome browser track files; class "chrnum" extends numeric for an indexing application on hg18track objects.
chrnum,hg18track-method | Class "hg18track" container for hg18 annotation found in genome browser track files; class "chrnum" extends numeric for an indexing application on hg18track objects.
chrnum,numeric-method | Class "hg18track" container for hg18 annotation found in genome browser track files; class "chrnum" extends numeric for an indexing application on hg18track objects.
chrnum-class | Class "hg18track" container for hg18 annotation found in genome browser track files; class "chrnum" extends numeric for an indexing application on hg18track objects.
chromStarts | Class "hg18track" container for hg18 annotation found in genome browser track files; class "chrnum" extends numeric for an indexing application on hg18track objects.
chromStarts,hg18track-method | Class "hg18track" container for hg18 annotation found in genome browser track files; class "chrnum" extends numeric for an indexing application on hg18track objects.
clipTrk | Class "hg18track" container for hg18 annotation found in genome browser track files; class "chrnum" extends numeric for an indexing application on hg18track objects.
clipTrk,hg18track,numeric,numeric,ANY-method | Class "hg18track" container for hg18 annotation found in genome browser track files; class "chrnum" extends numeric for an indexing application on hg18track objects.
dataVals | Class "hg18track" container for hg18 annotation found in genome browser track files; class "chrnum" extends numeric for an indexing application on hg18track objects.
dataVals,hg18track-method | Class "hg18track" container for hg18 annotation found in genome browser track files; class "chrnum" extends numeric for an indexing application on hg18track objects.
demoPGM1ssr | aligned and interpolated correlation for local maximum traces for two scatterplots
demoTrk19 | Class "hg18track" container for hg18 annotation found in genome browser track files; class "chrnum" extends numeric for an indexing application on hg18track objects.
getTrkXY | Class "hg18track" container for hg18 annotation found in genome browser track files; class "chrnum" extends numeric for an indexing application on hg18track objects.
getTrkXY,hg18track,character-method | Class "hg18track" container for hg18 annotation found in genome browser track files; class "chrnum" extends numeric for an indexing application on hg18track objects.
getTrkXY,hg18track,missing-method | Class "hg18track" container for hg18 annotation found in genome browser track files; class "chrnum" extends numeric for an indexing application on hg18track objects.
hg18track-class | Class "hg18track" container for hg18 annotation found in genome browser track files; class "chrnum" extends numeric for an indexing application on hg18track objects.
initialize,hg18track-method | Class "hg18track" container for hg18 annotation found in genome browser track files; class "chrnum" extends numeric for an indexing application on hg18track objects.
juxtaPlot | two-panel plot with track info and snp screen t-values
locmax | aligned and interpolated correlation for local maximum traces for two scatterplots
makeHg18track | Class "hg18track" container for hg18 annotation found in genome browser track files; class "chrnum" extends numeric for an indexing application on hg18track objects.
rangeLocs | Class "hg18track" container for hg18 annotation found in genome browser track files; class "chrnum" extends numeric for an indexing application on hg18track objects.
rangeLocs,hg18track-method | Class "hg18track" container for hg18 annotation found in genome browser track files; class "chrnum" extends numeric for an indexing application on hg18track objects.
rawCD4 | A data frame with information on the UCSC browser track related to DNaseI hypersensitivity
rawCd4DnaseI | A data frame with information on the UCSC browser track related to DNaseI hypersensitivity
rawHelaDnaseI | A data frame with information on the UCSC browser track related to DNaseI hypersensitivity
WRC | aligned and interpolated correlation for local maximum traces for two scatterplots
wrc | aligned and interpolated correlation for local maximum traces for two scatterplots
[,hg18track-method | Class "hg18track" container for hg18 annotation found in genome browser track files; class "chrnum" extends numeric for an indexing application on hg18track objects.